Doctor of Philosophy, The Ohio State University, 2018, Entomology
While numerous factors currently impact the health of honey bees and other pollinating Hymenoptera, poor floral resource availability due to habitat loss and land conversion is thought to be important. This issue is particularly salient in the upper Midwest, a location which harbors approximately 60 percent of the US honey bee colonies each summer for honey production. This region has experienced a dramatic expansion in the area devoted to crop production over the past decade. Consequently, understanding how changes to landscape composition affect the diversity, quality and quantity of available floral resources has become an important research goal.
Here, I developed molecular methods for the identification of bee-collected pollen by adapting and improving upon the existing amplicon sequencing infrastructure used for microbial community ecology. In thoroughly benchmarking our procedures, I show that a simple and cost-effective three-step PCR-based library preparation protocol in combination with Metaxa2-based hierarchical classification yields an accurate and highly quantitative pollen metabarcoding approach when applied across multiple plant markers.
In Chapter 1, I conducted one of the first ever proof-of-concept studies applying amplicon sequencing, or metabarcoding, to the identification of bee-collected pollen. In this work, we used rudimentary laboratory and bioinformatic methods to apply the method to a single nuclear marker, ITS2. In doing so, we found the method to be highly inaccurate with respect to quantitative inference of the relative abundances of different plant taxa represented within our sample. Thus, in Chapter 2 I used the same methods and turned my attention to two alternative chloroplast markers, matK and rbcL, in addition to ITS2. In this study, I found that the chloroplast markers were more useful for quantification of pollen abundance relative to ITS2.
With an improved understanding of the behavior of different plant markers, I began op (open full item for complete abstract)
Committee: Reed Johnson (Advisor); John Christman (Committee Member); Mary Gardiner (Committee Member); Roman Lanno (Committee Member)
Subjects: Agriculture; Bioinformatics; Biology; Ecology; Entomology; Pollen