Doctor of Philosophy, The Ohio State University, 2024, Biochemistry Program, Ohio State
Canonical eukaryotic messenger RNA (mRNA) translation primarily uses the heterotrimeric eukaryotic initiation factor 2 (eIF2) to deliver initiator transfer RNA (tRNA) to the 40S ribosomal subunit. Additionally, at least three other factors have been shown to deliver initiator tRNA, namely eIF2A, eIF2D, and the MCT-1•DENR complex, to the 40S ribosomal subunit. eIF2A, a monomer non-homologous to eIF2, was the first factor identified to deliver the initiator tRNA in eukaryotes. Further investigation into the mechanism of eIF2A dwindled once eIF2 was found to be the primary initiator tRNA carrier. The current model in the field posits that eIF2A delivers initiator tRNA to specific transcripts with near-cognate non-AUG start codons during normal conditions or cell stress. Biochemical analyses to verify the function of eIF2A were lacking due to the inability to achieve a high yield of soluble recombinant protein. Therefore, the exact function and mechanism of eIF2A in translation remains largely enigmatic. eIF2A depletion does not impact global translation levels in yeast, mouse, or human cells as shown by radiolabeled amino acid incorporation, polysome profiling, and ribosome profiling approaches. While eIF2A does not function in a major initiation pathway, this factor has been implicated in tumor progression and proper lipid metabolism in mice, indicating the importance of eIF2A in some biological processes. Multiple reports suggest that eIF2A is non-cytosolic, which is uncharacteristic of an initiation factor. During normal physiological conditions, eIF2A has specifically been reported to localize to the nucleus, endoplasmic reticulum, or mitochondria depending on the cell type. How and why eIF2A is kept away from the translation initiation machinery is unknown, but it may be a mechanism for cells to only use eIF2A in specific conditions. To gain insight into the function of eIF2A, we first developed a robust method to recombinantly express and purify eIF2A that yielde (open full item for complete abstract)
Committee: Michael Kearse (Advisor); Karin Musier-Forsyth (Committee Member); Jane Jackman (Committee Member); Kurt Fredrick (Committee Member)
Subjects: Biochemistry