Doctor of Philosophy in Regulatory Biology, Cleveland State University, 2016, College of Sciences and Health Professions
Trypanosoma brucei is a parasite that causes fatal African sleeping sickness. Antigenic variation is an obligatory mechanism for long-term survival of T. brucei inside its mammalian host. T. brucei expresses VSG as its major surface antigen and regularly switches its VSG coat to evade the host immune response. Although T. brucei genome has more than 2,500 VSG genes and pseudogenes, it only expresses one VSG from one of 15 subtelomeric VSG expression sites (ESs) at any time. VSG switching can be transcriptional (in situ switching) or be mediated by DNA homologous recombination (such as gene conversion and reciprocal DNA crossover/telomere exchange). However, regulation of VSG switching is poorly understood. We previously found that T. brucei RAP1, a telomere protein, is essential for silencing subtelomeric VSG genes. Here we found that transient depletion of TbRAP1 increases the VSG switching frequency, and most switchers in TbRAP1-depleted cells arose thorough VSG-associated gene conversion events. Also, we detected increased amount of DSBs in the active and silent ESs upon TbRAP1 depletion. However, the underlying mechanisms of how TbRAP1 suppresses DSBs at telomeres/subtelomere remained unknown.
T. brucei telomeres are transcribed, generating long, non-coding RNA called TERRA (Telomeric repeat-containing RNA). Now, we found that depletion of TbRAP1 not only leads to derepression of telomeric silent VSGs, but also results in increased TERRA levels. In addition, we observed a sixteen-fold increase in telomeric RNA:DNA hybrids (R-loops) in TbRAP1-depleted cells. R-loop has been shown to induce DSBs in yeast, mouse, and human cells and are sensitive to RNaseH, a ribonuclease that cleaves the RNA strand of the RNA:DNA hybrid. Ectopic expression of TbRNaseH1 in TbRAP1 RNAi cells resulted in reduction of the telomeric R-loop levels and reduced the DSB amount back to the WT level and suppressed the elevated VSG switching frequency phenotype. Therefore, we propose that (open full item for complete abstract)
Committee: Bibo Li Ph.D. (Advisor); Valentine Boerner Ph.D. (Committee Member); Aaron Severson Ph.D. (Committee Member); Michelle Longworth Ph.D. (Committee Member); Sailen Barik Ph.D. (Committee Member); Derek Taylor Ph.D. (Committee Member)
Subjects: Biology; Genetics; Molecular Biology