Doctor of Philosophy, The Ohio State University, 2023, Mechanical Engineering
The extracellular matrix (ECM) is a 3D non-cellular polymer network that is present within all tissues and organs. The ECM is complex, dynamically remodeling, and crucial for maintaining homeostasis of the cellular microenvironment. The ECM provides not only a physical scaffold for cells, but also regulates various processes such as proliferation, migration, and differentiation of cells. Crosstalk between ECM constituents can occur either physically where cell-ECM interactions are regulated by the biophysical properties of the host tissue, or biochemically, through signaling molecules.
On a biochemical level, interactions can happen through direct cell signaling, or through the ECM-mediated capture and release of potent signaling molecules. Studies have reported the effect of certain circulating molecules, like extracellular nucleic acids, and platelet derived growth factor (PDGF) in disease progression, such as in the case of cancer, cardiovascular, fibrotic, Parkinson, Alzheimer, and kidney diseases. On a biophysical level, modulation of the mechanical properties of the ECM by cells is believed to significantly influence the progression of certain diseased tissue such as in fibrosis, healing wounds, or the stroma of tumors, all of which are known to exhibit ECM remodeling through the cross-linking of fibrillar collagen and/or deposition of non-collagenous ECM. In addition, slowly moving interstitial flow through the ECM plays a major role in modulating cancer cell migration that may promote metastasis by redistributing morphogens, leading to chemotaxis, or through the activation of cell-surface mechanosensors, such as focal adhesion proteins, that promote cell motility.
Here, I present hybrid in vitro systems that utilize microfluidic devices and DNA-based nanoscale sensors that enable measuring biochemical cues and biophysical forces in the ECM at a sub-cellular level. This thesis is organized into three parts. Part 1 covers engineering the ECM with DNA-b (open full item for complete abstract)
Committee: Carlos Castro (Advisor); Benjamin Walter (Committee Member); Jonathan Song (Advisor); Gunjan Agarwal (Committee Member)
Subjects: Biomedical Engineering; Mechanical Engineering; Nanotechnology